Autoinhibition of human dicer by its internal helicase domain

E Ma, IJ MacRae, JF Kirsch, JA Doudna - Journal of molecular biology, 2008 - Elsevier
E Ma, IJ MacRae, JF Kirsch, JA Doudna
Journal of molecular biology, 2008Elsevier
Dicer, a member of the ribonuclease III family of enzymes, processes double-stranded RNA
substrates into∼ 21-to 27-nt products that trigger sequence-directed gene silencing by RNA
interference. Although the mechanism of RNA recognition and length-specific cleavage by
Dicer has been established, the way in which dicing activity is regulated is unclear. Here, we
show that the N-terminal domain of human Dicer, which is homologous to DExD/H-box
helicases, substantially attenuates the rate of substrate cleavage. Deletion or mutation of this …
Dicer, a member of the ribonuclease III family of enzymes, processes double-stranded RNA substrates into ∼21- to 27-nt products that trigger sequence-directed gene silencing by RNA interference. Although the mechanism of RNA recognition and length-specific cleavage by Dicer has been established, the way in which dicing activity is regulated is unclear. Here, we show that the N-terminal domain of human Dicer, which is homologous to DExD/H-box helicases, substantially attenuates the rate of substrate cleavage. Deletion or mutation of this domain activates human Dicer in both single- and multiple-turnover assays. The catalytic efficiency (kcat/Km) of the deletion construct is increased by 65-fold over that exhibited by the intact enzyme. Kinetic analysis shows that this activation is almost entirely due to an enhancement in kcat. Modest stimulation of catalysis by the full-length Dicer enzyme was observed in the presence of the TAR-RNA binding protein, which physically interacts with the DExD/H-box domain. These results suggest that the DExD/H-box domain likely disrupts the functionality of the Dicer active site until a structural rearrangement occurs, perhaps upon assembly with its molecular partners.
Elsevier